Genome-wide association mapping for agronomic and environmental traits in a panel of O. glaberrima rice accessions

Dataset Name : Genome-wide association mapping for root traits in a panel of rice accessions from Vietnam
Organism : O. sativa
Date : 2018
Unit : DIADE
Contact : Stefan JOUANNIC (stephane.jouannic@ird.fr)
Pipeline : SNP calling from MSU/GWAS by MLM (Tassel)
Description : This GWAS project for root traits is a collaboration between IRD (UMR DIADE) and LMI RICE (Vietnam). A panel of 180 Vietnamese rice varieties originating from provinces from North to South Vietnaman and from different agrosystems characterized by contrasted water regimes were used to perform a genome-wide association study for different root parameters.
Wet lab Protocol : In field phenotyping
Name correspondance : 

•         RL : rachis length
•         PBL : primary branch average length
•         SBL : secondary branch average length
•         PBintL : primary branch internode average length
•         SBintL : secondary branch internode average length
•         PBN : primary branch number
•         SBN : secondary branch number
•         SpN : spikelet number

Publication : https://doi.org/10.1186/s12870-018-1504-1