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Oryza sativa subsp. indica
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Oryza sativa subsp. indica 1B1 var. IR64
Summary
Taxonomy
Annotations
Publication
Ontology
Analysis
Statistics
Summary
Name
Oryza sativa subsp. indica 1B1 var. IR64
Description
Taxonomy
Division
Plants and Fungi
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Infraspecific Taxon
cultivar 1B1 IR64
Common Name
Oryza sativa indica 1B1 var. IR64
Synonym
Oryza sativa (indica cultivar-group)
Annotations
Publication
Zhou, Y., Chebotarov, D., Kudrna, D. et al.
A platinum standard pan-genome resource that represents the population structure of Asian rice
. Sci Data 7, 113 (2020). https://doi.org/10.1038/s41597-020-0438-2
Analysis
Analysis Table
Analyses
Name
Program
Date Constructed
Whole Genome Assembly and Annotation of Asian rice (Zhou et al, 2020)
MAKER-P
Jan 6th, 2020
InterPro (5.48-83.0) Annotations of IR64
InterProScan
Apr 24th, 2021
Genome sequencing and assembly of 12 rice varieties
Hybrid assembly method, using PacBio and Bionano data. See associated publication.
Apr 6th, 2020