Whole Genome Assembly and Annotation of Oryza rufipogon | Rice Genome Hub

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Summary

Name	Whole Genome Assembly and Annotation of Oryza rufipogon
Description	Protein-coding gene annotation was performed with evidence-based MAKER-P genome annotation pipeline. Non coding RNA genes were predicted with Infernal and tRNA genes with tRNAscan. RepeatMasker was used to annotate repeats and transposable elements with Oryza-specific de novo repeat libraries. These analyses were conducted at Arizona Genomics Institute (AGI) led by Dr. Rod Wing.
Program, Pipeline, Workflow or Method Name	Protein-coding gene annotation was performed with evidence-based MAKER-P genome annotation pipeline. Non coding RNA genes were predicted with Infernal and tRNA genes with tRNAscan. RepeatMasker was used to annotate repeats and transposable elements with O
Program Version	n/a
Organism	Oryza rufipogon (Oryza rufipogon)
Date Performed	Monday, December 14, 2020 - 16:25
Data Source	Source Name : Ensembl Plants Source Version : 51 Source URI : http://ftp.ensemblgenomes.org/pub/plants/release-51/gff3/oryza_rufipogon

Annotations

This record has the following annotations.
Term	Name	Definition
EDAM:topic_0222	Genome annotation	Annotation of a genome.

Publication

The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Current Opinion in Plant Biology, Volume 16, Issue 2, May 2013, Pages 147 - 156. Julie Jacquemin, Dharminder Bhatia, Kuldeep Singh, Rod A Wing

Rice GH is a collaborative project among rice teams from IRD & CIRAD. Funding has been provided by CRP Rice, IRD and CIRAD

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