The Rice Genome Hub provides a serie of tools to browse, visualize and search among all data sets available.
Search for highest similarity for your sequence of interest.
Tool for RNA-seq data analyses, from raw count to gene regulatory network. Allow the user to perform data normalisation, differential expression analyses, data visualisation, clustering, GO enrichment of such obtained genes lists and generate gene regulatory network.
Search for a gene by name, location, functional annotation keywords...
Gigwa is a web-based tool for the exploration of large amounts of genotyping data.
Tool to perform GO enrichment on list of genes.
Convert ID between MSU and RAP
Allows users to navigate genome sequence, annotation, and associated data track sequence, annotation, and associated data tracks .
Check PCR primer specificity on any Rice Genome
Primer Designer allows users to design new target-specific primers in one step as well as to check the specificity of pre-existing primers with BLAST.
Display count for various RNA-seq experiments.
Download genes Sequences and promoter sequences from given gene list in fasta or GenBank/Embl formats.
SniPlay allows the detection of SNPs derived from NGS technologies (WGRS, GBS, RNASeq...).
Explore synthenic and collinear blocks detected between Rice genomesĀ