The Rice Genome Hub provides a serie of tools to browse, visualize and search among all data sets available.

Blast

Search for highest similarity for your sequence of interest.

DiffExDB

For the visualization of differential expression analysis.

Dotplots

For the visualization of syntenic blocks.

Gene search

Search by locus id, GO, EC, InterPro, functional annotation keywords or coordinates on the chromosomes.

Gigwa

Gigwa is a web-based tool for the detection of genomic variation.

ID Converter

Convert ID between MSU and RAP

Jbrowse

Allows users to navigate genome sequence, annotation, and associated data track sequence, annotation, and associated data tracks .

PrimerBlaster

Primer Designer allows users to design new target-specific primers in one step as well as to check the specificity of pre-existing primers with BLAST.

PrimerDesigner

Primer Designer designs PCR primers amplifying a given chromosome location.

SniPlay

SniPlay allows the detection of SNPs derived from NGS technologies (WGRS, GBS, RNASeq...).

TAL effectors

Relational database that integrates TALE-related data.