Tools
The Rice Genome Hub provides a serie of tools to browse, visualize and search among all data sets available.
Blast Search
Search for highest similarity for your sequence of interest.
DIANE
Tool for RNA-seq data analyses, from raw count to gene regulatory network. Allow the user to perform data normalisation, differential expression analyses, data visualisation, clustering, GO enrichment of such obtained genes lists and generate gene regulatory network.
Gene Search
Search for a gene by name, location, functional annotation keywords...
Gigwa
Gigwa is a web-based tool for the exploration of large amounts of genotyping data.
GO Enrichment
Tool to perform GO enrichment on list of genes.
ID Converter
Convert ID between MSU and RAP
Jbrowse
Allows users to navigate genome sequence, annotation, and associated data track sequence, annotation, and associated data tracks .
Primer Blaster
Check PCR primer specificity on any Rice Genome
Primer Designer
Primer Designer allows users to design new target-specific primers in one step as well as to check the specificity of pre-existing primers with BLAST.
RNA-seq count display
Display count for various RNA-seq experiments.
Sequences download
Download genes Sequences and promoter sequences from given gene list in fasta or GenBank/Embl formats.
Sniplay
SniPlay allows the detection of SNPs derived from NGS technologies (WGRS, GBS, RNASeq...).
Synteny Viewer
Explore synthenic and collinear blocks detected between Rice genomes
Rice GH is a collaborative project among rice teams from IRD & CIRAD. Funding has been provided by CRP Rice, IRD and CIRAD
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