The Rice Genome Hub provides a serie of tools to browse, visualize and search among all data sets available.

Blast

Search for highest similarity for your sequence of interest.

Dotplot

For the visualization of syntenic blocks.

Gene Search

Search for a gene by name, location, functional annotation keywords...

Gigwa

Gigwa is a web-based tool for the detection of genomic variation.

ID Converter

Convert ID between MSU and RAP

Jbrowse

Allows users to navigate genome sequence, annotation, and associated data track sequence, annotation, and associated data tracks .

Primer Blaster

This tool was designed to test the specificity of any primer pair on the genome by using BLAST. Make sure primers have the same id in both cases....

Primer Designer

Primer Designer allows users to design new target-specific primers in one step as well as to check the specificity of pre-existing primers with...

Sniplay

SniPlay allows the detection of SNPs derived from NGS technologies (WGRS, GBS, RNASeq...).