Datasets
| Name | Description | Type |
|---|---|---|
| Whole Genome Assembly and Annotation for Nerica L19 | ||
| Whole Genome Assembly and Annotation for Nerica4 | ||
| Whole Genome Assembly and Annotation of Oryza rufipogon |
Protein-coding gene annotation was performed with evidence-based MAKER-P genome annotation pipeline. Non coding RNA genes were predicted with Infernal and tRNA genes with tRNAscan. RepeatMasker was used to annotate repeats and transposable elements with Oryza-specific de novo repeat libraries. These analyses were conducted at Arizona Genomics Institute (AGI) led by Dr. Rod Wing. |
Annotation of a genome. |
| Whole Genome Assembly and Annotation of Oryza punctata |
Protein-coding gene annotation was performed with evidence-based MAKER-P genome annotation pipeline. Non coding RNA genes were predicted with Infernal and tRNA genes with tRNAscan. RepeatMasker was used to annotate repeats and transposable elements with Oryza-specific de novo repeat libraries. These analyses were conducted at Arizona Genomics Institute (AGI) led by Dr. Rod Wing. |
Annotation of a genome. |
| Whole Genome Assembly and Annotation of Oryza meridionalis |
Protein-coding gene annotation was performed with evidence-based MAKER-P genome annotation pipeline. Non coding RNA genes were predicted with Infernal and tRNA genes with tRNAscan. RepeatMasker was used to annotate repeats and transposable elements with Oryza-specific de novo repeat libraries. These analyses were conducted at Arizona Genomics Institute (AGI) led by Dr. Rod Wing. |
Annotation of a genome. |
| Whole Genome Assembly and Annotation of Oryza longistaminata |
Protein-coding genes, annotation of repeats and transposable elements were conducted at Arizona Genomics Institute (AGI) led by Dr. Rod Wing. MAKER-P was used as evidence-based genome annotation pipeline. RepeatMasker was used to annotate repeats and transposable elements using species-specific de novo repeat libraries. Non coding RNA genes were predicted by AGI with Infernal, tRNA genes with tRNAScan. |
Annotation of a genome. |
| Whole Genome Assembly and Annotation of Oryza nivara |
Protein-coding gene annotation was performed with evidence-based MAKER-P genome annotation pipeline. Non coding RNA genes were predicted with Infernal and tRNA genes with tRNAscan. RepeatMasker was used to annotate repeats and transposable elements with Oryza-specific de novo repeat libraries. These analyses were conducted at Arizona Genomics Institute (AGI) led by Dr. Rod Wing |
Annotation of a genome. |
| Whole Genome Assembly and Annotation of Oryza barthii |
Protein-coding gene annotation was performed with evidence-based MAKER-P genome annotation pipeline. Non coding RNA genes were predicted with Infernal and tRNA genes with tRNAscan. RepeatMasker was used to annotate repeats and transposable elements with Oryza-specific de novo repeat libraries. These analyses were conducted at Arizona Genomics Institute (AGI) led by Dr. Rod Wing. |
Annotation of a genome. |
| Whole Genome Assembly and Annotation of Oryza glumipatula |
Protein-coding gene annotation was performed with evidence-based MAKER-P genome annotation pipeline. Non coding RNA genes were predicted with Infernal and tRNA genes with tRNAscan. RepeatMasker was used to annotate repeats and transposable elements with Oryza-specific de novo repeat libraries. These analyses were conducted at Arizona Genomics Institute (AGI) led by Dr. Rod Wing. |
Annotation of a genome. |
| Whole Genome Assembly and Annotation for Dom Sufid |
Gene annotation was conducted using the MAKER program. An in-depth description of running MAKER can be found on the website: https://gist.github.com/darencard/bb1001ac1532dd4225b030cf0cd61ce2 |
Annotation of a genome. |
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Rice GH is a collaborative project among rice teams from IRD & CIRAD. Funding has been provided by CRP Rice, IRD and CIRAD
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