Rice Genome Hub

Available Tools

The Rice Genome Hub provides a serie of tools to browse, visualize and search among all data sets available.

Tool for RNA-seq data analyses, from raw count to gene regulatory network. Allow the user to...

Search for a gene by name, location, functional annotation keywords...

Primer Designer allows users to design new target-specific primers in one step as well as to...

Check PCR primer specificity on any Rice Genome

Explore synthenic and collinear blocks detected between Rice genomes

Download genes Sequences and promoter sequences from given gene list in fasta or GenBank/Embl...

Allows users to navigate genome sequence, annotation, and associated data track sequence,...

Gigwa is a web-based tool for the exploration of large amounts of genotyping data.

The Rice Genome Hub provides access to 18 genomes and their annotation. Analysis performed on these genomes have also been integrated.

Oryza barthii

Oryza barthii is the AA genome progenitor of the West read more

Oryza brachyantha

Oryza brachyantha (wild rice) is a distant relative of read more

Oryza glaberrima CG14

Oryza glaberrima (African rice) is a cultivated grain read more

Oryza glumipatula

Oryza glumipatula is a wild rice from South America, one read more

Oryza longistaminata

Oryza longistaminata (AA genome type) is a wild rice, read more

Oryza meridionalis

Oryza meridionalis is a wild rice found in Australia, one read more

Oryza nivara

Oryza nivara is a wild rice from India; one of rice species being read more

Oryza punctata

Oryza punctata is a wild rice species native to Africa. Breeders read more