Oryza barthii

Oryza barthii is the AA genome progenitor of the West African cultivated rice, O. glaberrima. It belongs to the AA genome group and has 12 chromosomes and a nuclear genome size of 411 Mb (flow cytometry). It is found in mopane or savanna woodland, savanna or fadama. Grows in deep water, seasonally flooded land, stagnant water, and slowly flowing water or pools; prefers clay or black cotton soils. Found in open habitats.
Source : Ensembl Plants

Plants and Fungi
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Common Name
Oryza barthii
The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Current Opinion in Plant Biology, Volume 16, Issue 2, May 2013, Pages 147 - 156. Julie Jacquemin, Dharminder Bhatia, Kuldeep Singh, Rod A Wing
Analysis Table
NameProgramDate Constructed
Genome sequencing and assembly of Oryza barthiiProtein-coding gene annotation was performed with evidence-based MAKER-P genome annotation pipeline. Non coding RNA genes were predicted with Infernal and tRNA genes with tRNAscan.Dec 14th, 2018
InterPro (5.48-83.0) Annotations of O. barthiiInterProScanJan 7th, 2022
Whole Genome Assembly and Annotation of Oryza barthiiMAKER-PApr 24th, 2023