Genome sequencing and assembly of Oryza barthii | Rice Genome Hub

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Summary

Name	Genome sequencing and assembly of Oryza barthii
Program, Pipeline, Workflow or Method Name	Protein-coding gene annotation was performed with evidence-based MAKER-P genome annotation pipeline. Non coding RNA genes were predicted with Infernal and tRNA genes with tRNAscan.
Program Version	n/a
Organism	Oryza barthii (Oryza barthii)
Date Performed	Friday, December 14, 2018 - 17:00
Data Source	Source Name : Ensembl Plants and ENA Source Version : 51 Source URI : http://ftp.ensemblgenomes.org/pub/plants/release-51/fasta/oryza_barthii/ && https://www.ebi.ac.uk/ena/browser/view/GCA_000182155

Annotations

This record has the following annotations.
Term	Name	Definition
EDAM:topic_0222	Genome annotation	Annotation of a genome.

Publication

The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Current Opinion in Plant Biology, Volume 16, Issue 2, May 2013, Pages 147 - 156. Julie Jacquemin, Dharminder Bhatia, Kuldeep Singh, Rod A Wing
JC Stein, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics volume 50, pages 285–296 (2018)

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