Whole Genome Assembly and Annotation of Oryza meridionalis | Rice Genome Hub

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Summary

Name	Whole Genome Assembly and Annotation of Oryza meridionalis
Description	Protein-coding gene annotation was performed with evidence-based MAKER-P genome annotation pipeline. Non coding RNA genes were predicted with Infernal and tRNA genes with tRNAscan. RepeatMasker was used to annotate repeats and transposable elements with Oryza-specific de novo repeat libraries. These analyses were conducted at Arizona Genomics Institute (AGI) led by Dr. Rod Wing.
Program, Pipeline, Workflow or Method Name	Abyss, SSPACE, GapFiller, MAKER-P
Program Version	n/a
Organism	Oryza meridionalis (Oryza meridionalis)
Date Performed	Saturday, December 14, 2019 - 17:41
Data Source	Source Name : Ensembl Plants and ENA Source Version : 51 Source URI : http://ftp.ensemblgenomes.org/pub/plants/release-52/fasta/oryza_meridionalis/

Annotations

This record has the following annotations.
Term	Name	Definition
EDAM:topic_0222	Genome annotation	Annotation of a genome.

Publication

JC Stein, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics volume 50, pages 285–296 (2018)

Rice GH is a collaborative project among rice teams from IRD & CIRAD. Funding has been provided by CRP Rice, IRD and CIRAD

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