Whole Genome Assembly and Annotation of Oryza longistaminata | Rice Genome Hub

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Summary

Name	Whole Genome Assembly and Annotation of Oryza longistaminata
Description	Protein-coding genes, annotation of repeats and transposable elements were conducted at Arizona Genomics Institute (AGI) led by Dr. Rod Wing. MAKER-P was used as evidence-based genome annotation pipeline. RepeatMasker was used to annotate repeats and transposable elements using species-specific de novo repeat libraries. Non coding RNA genes were predicted by AGI with Infernal, tRNA genes with tRNAScan.
Program, Pipeline, Workflow or Method Name	SOAP de novo, Genome Puzzle Mate, MAKER-P
Program Version	n/a
Organism	Oryza longistaminata (Oryza longistaminata)
Date Performed	Saturday, December 14, 2019 - 17:47
Data Source	Source Name : Ensembl Plants and ENA Source Version : 51 Source URI : http://ftp.ensemblgenomes.org/pub/plants/release-51/fasta/oryza_longistaminata/

Annotations

This record has the following annotations.
Term	Name	Definition
EDAM:topic_0222	Genome annotation	Annotation of a genome.

Publication

JC Stein, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics volume 50, pages 285–296 (2018)

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