Whole Genome Assembly and Annotation of Oryza brachyantha | Rice Genome Hub

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Summary

Name	Whole Genome Assembly and Annotation of Oryza brachyantha
Description	Protein-coding genes were annotated using an evidence-based approach as implemented in the Gramene gene-build pipeline by collaboration with Dr. Chengzhi Liang at IGDB. Transposable elements were annotated by collaboration with Dr. Scott A. Jackson at University of Georgia. Non coding RNA genes were predicted with Infernal and tRNA genes with tRNAscan at Arizona Genomics Institute (AGI) led by Dr. Rod Wing. Source : Ensembl Plant
Program, Pipeline, Workflow or Method Name	Gramene Gene build
Program Version	n/a
Organism	Oryza brachyantha (Oryza brachyantha)
Date Performed	Friday, December 14, 2018 - 18:04
Data Source	Source Name : Ensembl Plants and ENA Source Version : 51 Source URI : http://ftp.ensemblgenomes.org/pub/plants/release-51/fasta/oryza_brachyantha/

Annotations

This record has the following annotations.
Term	Name	Definition
EDAM:topic_0222	Genome annotation	Annotation of a genome.

Publication

Chen, J., Huang, Q., Gao, D. et al. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nat Commun 4, 1595 (2013). https://doi.org/10.1038/ncomms2596

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