Summary
Name
Oryza sativa basmati sadri Dom Sufid
Description

Dom Sufid (IRGC 117265; GeneSys passport: https://purl.org/germplasm/id/fb861458-09de-46c4-b9ca-f5c439822919) is a sadri landrace from Iran.

Seeds from accessions IRGC 117265 were obtained from the IRRI seed bank, surface-sterilized with bleach, and germinated in the dark on a wet paper towel for 4 days. Seedlings were transplanted individually in pots containing continuously wet soil in a greenhouse at New York University’s Center for Genomics and Systems Biology and cultivated under a 12-h day-12-h night photoperiod at 30 °C. Plants were kept in the dark in a growth cabinet under the same climatic conditions for 4 days prior to tissue harvesting. Continuous darkness induced chloroplast degradation, which diminishes the amount of chloroplast DNA that would otherwise end up in the DNA extracted from the leaves.

Taxonomy
Common Name
Oryza sativa basmati sadri Dom Sufid
Annotations
Publication
Publication: 
Choi JY, Lye ZN, Groen SC, Dai X, Rughani P, Zaaijer S, Harrington ED, Juul S, Purugganan MD. Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice.. Genome biology. 2020 02 05; 21(1):21.
Analysis
Analysis Table
Analyses
NameProgramDate Constructed
InterPro (5.48-83.0) Annotations of Dom SufidInterProScanJun 3rd, 2021
Whole Genome Assembly and Annotation for Dom SufidMakerJun 3rd, 2021