Summary
Name
Oryza sativa basmati ARC10497
Description
Taxonomy
Division
Plants and Fungi
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Infraspecific Taxon
varietas basmati ARC10497
Common Name
Oryza sativa basmati ARC10497
Synonym
Oryza sativa (indica cultivar-group)
Annotations

Content

 

BUSCO version is: 5.0.0

The lineage dataset is poales_odb10 (Creation date: 2020-08-05, number of species: 12, number of BUSCOs: 4896)

 
Category Number %
Complete BUSCOs (C) 4740 96,9%
Complete and single-copy BUSCOs (S) 4644 94.9%
Complete and duplicated BUSCOs (D) 96 2.0%
Fragmented BUSCOs (F) 78 1.6%
Missing BUSCOs (M) 78 1.5%
Total BUSCO groups searched 4896 100%
Publication
Publication: 
Zhou, Y., Chebotarov, D., Kudrna, D. et al. A platinum standard pan-genome resource that represents the population structure of Asian rice. Sci Data 7, 113 (2020). https://doi.org/10.1038/s41597-020-0438-2
Analysis
Analysis Table
Analyses
NameProgramDate Constructed
Genome annotation of 12 rice varietiesEuGene-EPMar 31st, 2021
InterPro (5.48-83.0) Annotations of BasmatiInterProScanApr 24th, 2021
Genome sequencing and assembly of 12 rice varietiesHybrid assembly method, using PacBio and Bionano data. See associated publication.Apr 6th, 2020